OpenSMOG
1.1.1-docs

Getting Started

  • Installation
  • Introduction

OpenSMOG Modules

  • OpenSMOG

Tutorials

  • Using SMOG2 to generate C-alpha and All-Atom Structure-Based models
  • Perform a simulation with a C-alpha Structure-Based Model using OpenSMOG
  • Perform a simulation with an All-Atom Structure-Based Model using OpenSMOG

Reference

  • How to cite OpenSMOG
  • References
  • License
OpenSMOG
  • »
  • Index
  • Edit on GitHub

Index

C | H | L | M | O | R | S | V

C

  • createReporters() (OpenSMOG.SBM method)
  • createSimulation() (OpenSMOG.SBM method)

H

  • help() (OpenSMOG.SBM method)

L

  • loadGro() (OpenSMOG.SBM method)
  • loadSystem() (OpenSMOG.SBM method)
  • loadTop() (OpenSMOG.SBM method)
  • loadXml() (OpenSMOG.SBM method)

M

  • minimize() (OpenSMOG.SBM method)
  • module
    • OpenSMOG

O

  • OpenSMOG
    • module
  • opensmog_quit() (OpenSMOG.SBM method)
  • opensmogcheck() (OpenSMOG.SBM method)

R

  • run() (OpenSMOG.SBM method)
  • runForClockTime() (OpenSMOG.SBM method)

S

  • saveFolder() (OpenSMOG.SBM method)
  • SBM (class in OpenSMOG)
  • setup_openmm() (OpenSMOG.SBM method)

V

  • version (OpenSMOG.SBM attribute)

© Copyright 2020-2021 The Center for Theoretical Biological Physics (CTBP) - Rice University & Northeastern University. Revision b6ad6d64.

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